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Commit 7d6017ef authored by William Stonewall Monroe's avatar William Stonewall Monroe
Browse files

updating readme for clarity

parent d519057b
......@@ -6,8 +6,7 @@ Copy and paste the following job script into a job composer job on rc.uab.edu
```
#!/bin/bash
#SBATCH --partition=pascalnodes
#SBATCH --gres=gpu:1
#SBATCH --partition=express
#SBATCH --mem-per-cpu=4000
module load cuda10.0/toolkit
module load Anaconda3
......@@ -23,11 +22,7 @@ else
conda env update -f /data/user/$USER/slurm-ds/environment-slurm-ds.yml
fi
```
If we have to create a database from sacct
```
directoryToUse="/data/user/$USER/group"
sacct -P -u $USER --starttime=2019-01-01 --format user,start,jobid,jobname,state,partition,maxrss,reqmem,reqcpus,node,nnodes,elapsed >> "$directoryToUse"group.db
```
# Check to see if the environment works
After the environment is created, you can start up an interactive Jupyter notebook session through rc.uab.edu to check if the environment works.
......@@ -52,4 +47,12 @@ For partition, specify
```
pascalnodes
```
\ No newline at end of file
```
# Creating a text version of sacct output
If we have to create a database from sacct
```
directoryToUse="/data/user/$USER/group"
sacct -P -u $USER --starttime=2019-01-01 --format user,start,jobid,jobname,state,partition,maxrss,reqmem,reqcpus,node,nnodes,elapsed >> "$directoryToUse"group.txt
```
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