Commit d8cad0c7 authored by William Stonewall Monroe's avatar William Stonewall Monroe
Browse files

updating readme to appropriately configure env

parent 7d6017ef
......@@ -23,7 +23,7 @@ else
fi
```
# Check to see if the environment works
# Configuring the environment
After the environment is created, you can start up an interactive Jupyter notebook session through rc.uab.edu to check if the environment works.
......@@ -32,9 +32,7 @@ Under environment setup, specify
```
# Load required modules
module load cuda10.0/toolkit
module load Anaconda3
module load Anaconda3/2019.10
```
Under Extra jupyter arguments, specify
......@@ -43,11 +41,21 @@ Under Extra jupyter arguments, specify
--notebook-dir=/data/user/$USER/slurm-ds
```
For partition, specify
For partition, set partition to
```
express
```
pascalnodes
for time up to 2 hours. Also make sure to specify the number of hours field to match. For up to 12 hours, the
```
short
```
partition can be used.
After the Jupyter notebook is started, click on the blue "Connect to Jupyter" button.
Once the Jupyter session is active, select the `slurm-2sql` notebook. Then change the kernel, via `Kernel->Change kernel->Python [conda env:.conda-slurm-ds]`
Verify the environment loaded correctly by running the first cell of the `slurm-2sql` notebook (with the library imports)
# Creating a text version of sacct output
......
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