2 hours wasn't enough time for the majority of HCP subjects. Changed partition...

2 hours wasn't enough time for the majority of HCP subjects. Changed partition type and increased time limit to 12 hours

cheaha_vessels_segment.sh

 #!/bin/bash
-jobs=/data/scratch/kecannon/brainhack2018/jobs2_HCP
+jobs=/data/scratch/kecannon/brainhack2018/jobs3_HCP
 sub_dir=/data/scratch/kecannon/brainhack2018/HCP
 mkdir $jobs
 
@@ -24,7 +24,7 @@ do
 #Submit jobs
 pushd $jobs
 echo "submitting segment job for $sub"
-sbatch --job-name=segment_$sub --output=segment_$sub.txt --ntasks=1 --partition=express --mem-per-cpu=9192 --time=2:00:00 segment_$sub.sh 
+sbatch --job-name=segment_$sub --output=segment_$sub.txt --ntasks=1 --partition=short --mem-per-cpu=9192 --time=12:00:00 segment_$sub.sh 
 popd
 
 done