Commit 4b8e0f34 authored by Robert Phillips's avatar Robert Phillips
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parent 51a54f64
#Load bedtools
module load BEDTools
cd /data/user/rphill3/Enhancer_Ident_ATAC/Final_PeakCalls
for i in *.narrowPeak.bed
#sort the bed
sort -k1,1 -k2,2n $i > Sorted_beds/$i.sorted.bed
#merge peaks within 1000bps of each other
bedtools merge -i Sorted_beds/$i.sorted.bed -d 1000 > Merged_beds/$i.sorted.merged.bed
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