Commit 58355f5c authored by Robert Phillips's avatar Robert Phillips
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parent 256333db
module load MACS2
macs2 callpeak \
--treatment /data/user/rphill3/Enhancer_Ident_ATAC/Str_ATAC_merged.bam \
--qvalue 0.00001 \
--gsize 2729862089 \
--format BAMPE \
--outdir /data/user/rphill3/Enhancer_Ident_ATAC/Final_PeakCalls \
--name Str_Merged_BAMPE_narrow_0.00001_FinalPeaks
macs2 callpeak \
--treatment /data/user/rphill3/Enhancer_Ident_ATAC/Cor_ATAC_merged.bam \
--qvalue 0.00001 \
--gsize 2729862089 \
--format BAMPE \
--outdir /data/user/rphill3/Enhancer_Ident_ATAC/Final_PeakCalls \
--name Cor_Merged_BAMPE_narrow_0.00001_FinalPeaks
macs2 callpeak \
--treatment /data/user/rphill3/Enhancer_Ident_ATAC/Hpc_ATAC_merged.bam \
--qvalue 0.00001 \
--gsize 2729862089 \
--format BAMPE \
--outdir /data/user/rphill3/Enhancer_Ident_ATAC/Final_PeakCalls \
--name Hpc_Merged_BAMPE_narrow_0.00001_FinalPeaks
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