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Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.

First Flask Web App. Following a series of blog post by Mbithe Nzomo: https://scotch.io/tutorials/build-a-crud-web-app-with-python-and-flask-part-one

Two sample lists

samples to be processed from raw, internally additional samples already pre-processed from an external source

Repo for testing http://docs.openstack.org/infra/openstackci/third_party_ci.html#create-an-initial-project-config-repository

Describes the zuul (gating), nodepool (image management), and jenkins (ci job management) tasks that drives openstackci.

Uses OpenAI API to determine if a research idea is reasonable and novel for the MPOG database. Not affiliated with MPOG in any way.

A boilerplate for reproducible computational biology projects.