Gitlab has been upgraded from version 14.2 to 14.4. Release notes can be found here (we run the Core release): https://about.gitlab.com/releases/2021/10/22/gitlab-14-4-released/
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This project stores skeleton code, data, and instructions for labs written for the R component of the GRD 770 course taught in Fall 2019.
Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.
First Flask Web App. Following a series of blog post by Mbithe Nzomo:
This is code used to train a unet and a resnet unet using keras and tensorflow. The model is in large part taken from https://github.com/killthekitten/kaggle-carvana-2017, but it has been extended to use horovod and data generators
This is a set of notebooks to implement and train a unet for semantic segmentation. model largely pulled from https://github.com/petrosgk/Kaggle-Carvana-Image-Masking-Challenge/blob/master/model/u_net.py, and updated to utilize data generators
Setting up a repository to get folks started with Data exploration in R