GitLab

This project stores skeleton code, data, and instructions for labs written for the R component of the GRD 770 course taught in Fall 2019.

Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.

First Flask Web App. Following a series of blog post by Mbithe Nzomo: https://scotch.io/tutorials/build-a-crud-web-app-with-python-and-flask-part-one

This is code used to train a unet and a resnet unet using keras and tensorflow. The model is in large part taken from https://github.com/killthekitten/kaggle-carvana-2017, but it has been extended to use horovod and data generators

This is a set of notebooks to implement and train a unet for semantic segmentation. model largely pulled from https://github.com/petrosgk/Kaggle-Carvana-Image-Masking-Challenge/blob/master/model/u_net.py, and updated to utilize data generators

Setting up a repository to get folks started with Data exploration in R