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While working with XDMOD we observed that the slurm job table was missing id_assoc data for some entries. Due to this sacct was not able to get user-name and account-name. This was leading to XDMOD putting some jobs under unknown users.
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Two sample lists
samples to be processed from raw, internally additional samples already pre-processed from an external sourceUpdated -
PE Fastq QC, then de novo assembly with Spades. Intended for viral and bacterial genomics
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a python script wrap tcl2lua.tcl, provided by lmod, converts tcl module files into lua module files
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This tutorial allows user to run parallelism using bash scripts and array jobs. Also it contains parallel scripts for matlab and R
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Self user registration flask app. Built to be deployed on cheaha (rc.uab.edu)
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