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This project is to keep scripts created to build software on BigGreen by using Easybuild and SLURM.

PE Fastq QC, then de novo assembly with Spades. Intended for viral and bacterial genomics

Two sample lists

samples to be processed from raw, internally additional samples already pre-processed from an external source

This project contains sample slurm job scripts.

Experiment with new slurm features in dev environment

While working with XDMOD we observed that the slurm job table was missing id_assoc data for some entries. Due to this sacct was not able to get user-name and account-name. This was leading to XDMOD putting some jobs under unknown users.

Basic Singularity container commands

Basic Singularity container commands

Basic Singularity container commands