Two sample lists

samples to be processed from raw, internally additional samples already pre-processed from an external source

PE Fastq QC, then de novo assembly with Spades. Intended for viral and bacterial genomics

Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.

Repo for testing http://docs.openstack.org/infra/openstackci/third_party_ci.html#create-an-initial-project-config-repository

Describes the zuul (gating), nodepool (image management), and jenkins (ci job management) tasks that drives openstackci.

A boilerplate for reproducible computational biology projects.