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Two sample lists
samples to be processed from raw, internally additional samples already pre-processed from an external sourceUpdated -
PE Fastq QC, then de novo assembly with Spades. Intended for viral and bacterial genomics
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Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.
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Repo for testing http://docs.openstack.org/infra/openstackci/third_party_ci.html#create-an-initial-project-config-repository
Describes the zuul (gating), nodepool (image management), and jenkins (ci job management) tasks that drives openstackci.
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A boilerplate for reproducible computational biology projects.
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