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UAB Research Computing Node Health Check (NHC) configuration files and scripts. The upstream Node Health Check project contains the NHC code.

A place to build out the package for HRV tool.

Uses OpenAI API to determine if a research idea is reasonable and novel for the MPOG database. Not affiliated with MPOG in any way.

a python script wrap tcl2lua.tcl, provided by lmod, converts tcl module files into lua module files

Two sample lists

samples to be processed from raw, internally additional samples already pre-processed from an external source

PE Fastq QC, then de novo assembly with Spades. Intended for viral and bacterial genomics

Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.