GitLab

NIH AFNI's historical matlab code for handling MRI volumes

This is a notebook for detecting anomalies in images based on an autoencoder reconstruction. The original autoencoder network is based off of https://www.datacamp.com/community/tutorials/reconstructing-brain-images-deep-learning

A collection of utilities for manipulating data and calculating inter-annotator agreement in brat annotation files.

Using https://blog.keras.io/building-autoencoders-in-keras.html as a template, this project is for building simple autoencoders for image denoising

Using https://blog.keras.io/building-autoencoders-in-keras.html as a template, this project is for building simple autoencoders for image denoising

Using https://blog.keras.io/building-autoencoders-in-keras.html as a template, this project is for building simple autoencoders for image denoising

Download cov2 (WuHan1 strain) fasta and gff3 from NCBI, and index with BWA, STAR, etc.