Commit d8cad0c7 authored by William Stonewall Monroe's avatar William Stonewall Monroe
Browse files

updating readme to appropriately configure env

parent 7d6017ef
...@@ -23,7 +23,7 @@ else ...@@ -23,7 +23,7 @@ else
fi fi
``` ```
# Check to see if the environment works # Configuring the environment
After the environment is created, you can start up an interactive Jupyter notebook session through rc.uab.edu to check if the environment works. After the environment is created, you can start up an interactive Jupyter notebook session through rc.uab.edu to check if the environment works.
...@@ -32,9 +32,7 @@ Under environment setup, specify ...@@ -32,9 +32,7 @@ Under environment setup, specify
``` ```
# Load required modules # Load required modules
module load cuda10.0/toolkit module load cuda10.0/toolkit
module load Anaconda3 module load Anaconda3/2019.10
``` ```
Under Extra jupyter arguments, specify Under Extra jupyter arguments, specify
...@@ -43,11 +41,21 @@ Under Extra jupyter arguments, specify ...@@ -43,11 +41,21 @@ Under Extra jupyter arguments, specify
--notebook-dir=/data/user/$USER/slurm-ds --notebook-dir=/data/user/$USER/slurm-ds
``` ```
For partition, specify For partition, set partition to
```
express
``` ```
pascalnodes for time up to 2 hours. Also make sure to specify the number of hours field to match. For up to 12 hours, the
``` ```
short
```
partition can be used.
After the Jupyter notebook is started, click on the blue "Connect to Jupyter" button.
Once the Jupyter session is active, select the `slurm-2sql` notebook. Then change the kernel, via `Kernel->Change kernel->Python [conda env:.conda-slurm-ds]`
Verify the environment loaded correctly by running the first cell of the `slurm-2sql` notebook (with the library imports)
# Creating a text version of sacct output # Creating a text version of sacct output
......
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