From f2d87e17968ff4f58fa952cbf2522e474be5a04e Mon Sep 17 00:00:00 2001
From: Krish Moodbidri <krish94@uab.edu>
Date: Wed, 10 Aug 2022 16:01:54 -0500
Subject: [PATCH] feat add version v1 for cod cluster
---
form.yml | 55 ++++++++++++++++++++++++++++++++++++++++++++++++++
manifest.yml | 4 ++--
script.sh.erb | 36 +++++++++++++++++++++++++++++++++
submit.yml.erb | 30 +++++++++------------------
4 files changed, 103 insertions(+), 22 deletions(-)
create mode 100644 form.yml
create mode 100644 script.sh.erb
diff --git a/form.yml b/form.yml
new file mode 100644
index 0000000..07ca419
--- /dev/null
+++ b/form.yml
@@ -0,0 +1,55 @@
+---
+cluster: "SLURM_CLUSTER"
+attributes:
+ bc_num_hours:
+ value: 1
+
+ bc_num_slots:
+ label: Number of CPU
+ value: 1
+ min: 1
+ max: 24
+ step: 1
+
+ bc_num_mems:
+ widget: "number_field"
+ label: Memory per CPU (GB)
+ value: 4
+ min: 1
+ max: 128
+ step: 1
+
+ bc_partition:
+ widget: select
+ label: Partition
+ options:
+ - [ "express", "express" ]
+ - [ "short", "short" ]
+ - [ "medium", "medium" ]
+ - [ "long", "long" ]
+ - [ "interactive", "interactive" ]
+ - [ "pascalnodes", "pascalnodes" ]
+ - [ "pascalnodes-medium", "pascalnodes-medium" ]
+ - [ "largemem", "largemem" ]
+ - [ "largemem-long", "largemem-long" ]
+ - [ "amd-hdr100", "amd-hdr100" ]
+
+ version:
+ widget: select
+ label: "MATLAB version"
+ help: "This defines the version of MATLAB you want to load."
+ options:
+{% for ver in matlab_vers %}
+ - [ "{{ ver }}", "{{ matlab_module_name }}/{{ ver }}"]
+{% endfor %}
+
+ cuda_toolkit: "{{ cuda_toolkit_module }}"
+
+form:
+ - version
+ - bc_num_hours
+ - bc_partition
+ - bc_num_slots
+ - bc_num_mems
+ - bc_email_on_started
+ - cuda_toolkit
diff --git a/manifest.yml b/manifest.yml
index 0841d1e..c2232c5 100644
--- a/manifest.yml
+++ b/manifest.yml
@@ -4,8 +4,8 @@ category: Interactive Apps
subcategory: GUIs
role: batch_connect
description: |
- This app will launch a [MATLAB] GUI on the [Owens cluster]. You will be able
+ This app will launch a [MATLAB] GUI on the [Cheaha cluster]. You will be able
to interact with the MATLAB GUI through a VNC session.
[MATLAB]: https://www.mathworks.com/products/matlab.html
- [Owens cluster]: https://www.osc.edu/resources/technical_support/supercomputers/owens
+ [Cheaha cluster]: https://uabrc.github.io
diff --git a/script.sh.erb b/script.sh.erb
new file mode 100644
index 0000000..8884fa8
--- /dev/null
+++ b/script.sh.erb
@@ -0,0 +1,36 @@
+#!/usr/bin/env bash
+
+# Set working directory to home directory
+cd "${HOME}"
+
+#
+# Launch Xfce Window Manager and Panel
+#
+
+(
+ export SEND_256_COLORS_TO_REMOTE=1
+ export XDG_CONFIG_HOME="<%= session.staged_root.join("config") %>"
+ export XDG_DATA_HOME="<%= session.staged_root.join("share") %>"
+ export XDG_CACHE_HOME="$(mktemp -d)"
+ module reset
+ set -x
+ xfwm4 --compositor=off --daemon --sm-client-disable
+ xsetroot -solid "#D3D3D3"
+ xfsettingsd --sm-client-disable
+ xfce4-panel --sm-client-disable
+) &
+
+#
+# Start MATLAB
+#
+
+<%- if context.bc_partition == "pascalnodes" -%>
+# Load CUDA toolkit
+module load <%= context.cuda_toolkit %>
+<%- end -%>
+# Load the required environment
+module load <%= context.version %>
+# Launch MATLAB
+module list
+set -x
+matlab -desktop
diff --git a/submit.yml.erb b/submit.yml.erb
index e89017d..2521f4a 100644
--- a/submit.yml.erb
+++ b/submit.yml.erb
@@ -1,24 +1,14 @@
-<%-
- ppn = num_cores.blank? ? 28 : num_cores.to_i
- nodes = bc_num_slots.blank? ? 1 : bc_num_slots.to_i
-
- case node_type
- when "hugemem"
- ppn = 48
- partition = bc_num_slots.to_i > 1 ? "hugemem-parallel" : "hugemem"
- slurm_args = [ "--nodes", "#{nodes}", "--ntasks-per-node", "#{ppn}", "--partition", partition ]
- when "vis"
- slurm_args = ["--nodes", "#{nodes}", "--ntasks-per-node", "#{ppn}", "--gpus-per-node", "1", "--gres", "vis" ]
- else
- slurm_args = ["--nodes", "#{nodes}", "--ntasks-per-node", "#{ppn}" ]
- end
-%>
---
batch_connect:
- template: vnc
+ template: "vnc"
script:
- accounting_id: "<%= account %>"
native:
- <%- slurm_args.each do |arg| %>
- - "<%= arg %>"
- <%- end %>
+ - "-N 1"
+ - "-n <%= bc_num_slots.blank? ? 1 : bc_num_slots.to_i %>"
+ - "--mem-per-cpu=<%= bc_num_mems.blank? ? 4 : bc_num_mems.to_i %>G"
+ - "--partition=<%= bc_partition %>"
+ - "--time=<%= bc_num_hours.blank? ? 1 : bc_num_hours.to_i %>:00:00"
+ - "--job-name=ood-matlab-<%= version.split("/")[-1] %>"
+<%- if bc_partition.include? "pascalnodes" -%>
+ - "--gres=gpu:1"
+<%- end -%>
--
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