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Commit 742c24a2 authored by Bo-Chun Chen's avatar Bo-Chun Chen
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Update fsqc.sh 

Remove lines that create lr.tif
Use hr directly in index.html
parent ffe3f16a
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fsqc.sh
View file @ 742c24a2
#!/bin/bash
echo "<html>" > index.html
echo "<table>" >> index.html
echo "<html>" > index.html
echo "<table>" >> index.html
for sub in $(ls ${SUBJECTS_DIR});
do
echo "<tr>" >> index.html
echo "<td><a href=\"file:"$sub".lh.lat.hr.png\"><img src=\""$sub".lh.lat.lr.png\"></a></td>" >> index.html
echo "<td><a href=\"file:"$sub".lh.med.hr.png\"><img src=\""$sub".lh.med.lr.png\"></a></td>" >> index.html
echo "<td><a href=\"file:"$sub".rh.lat.hr.png\"><img src=\""$sub".rh.lat.lr.png\"></a></td>" >> index.html
echo "<td><a href=\"file:"$sub".rh.med.hr.png\"><img src=\""$sub".rh.med.lr.png\"></a></td>" >> index.html
echo "</tr>" >> index.html
echo "<tr>" >> index.html
echo "<td colspan=4><center>"$sub"</center><br></td>" >> index.html
echo "</tr>" >> index.html
echo "<tr>" >> index.html
echo "<td><a href=\"file:"$sub".lh.lat.hr.png\"><img width=\"300\" src=\""$sub".lh.lat.hr.png\"></a></td>" >> index.html
echo "<td><a href=\"file:"$sub".lh.med.hr.png\"><img width=\"300\" src=\""$sub".lh.med.hr.png\"></a></td>" >> index.html
echo "<td><a href=\"file:"$sub".rh.lat.hr.png\"><img width=\"300\" src=\""$sub".rh.lat.hr.png\"></a></td>" >> index.html
echo "<td><a href=\"file:"$sub".rh.med.hr.png\"><img width=\"300\" src=\""$sub".rh.med.hr.png\"></a></td>" >> index.html
echo "</tr>" >> index.html
echo "<tr>" >> index.html
echo "<td colspan=4><center>"$sub"</center><br></td>" >> index.html
echo "</tr>" >> index.html
echo "labl_import_annotation \"aparc.annot\"" > tmp.tcl
......@@ -22,13 +22,6 @@ do
echo "rotate_brain_y 180.0" >>tmp.tcl
echo "redraw" >>tmp.tcl
echo "save_tiff "$sub".lh.med.hr.tif" >>tmp.tcl
echo "resize_window 300" >>tmp.tcl
echo "rotate_brain_y -180.0" >>tmp.tcl
echo "redraw" >>tmp.tcl
echo "save_tiff "$sub".lh.lat.lr.tif" >>tmp.tcl
echo "rotate_brain_y 180.0" >>tmp.tcl
echo "redraw" >>tmp.tcl
echo "save_tiff "$sub".lh.med.lr.tif" >>tmp.tcl
echo "exit 0" >>tmp.tcl
tksurfer $sub lh pial -tcl tmp.tcl
......@@ -39,13 +32,6 @@ do
echo "rotate_brain_y 180.0" >>tmp.tcl
echo "redraw" >>tmp.tcl
echo "save_tiff "$sub".rh.med.hr.tif" >>tmp.tcl
echo "rotate_brain_y -180.0" >>tmp.tcl
echo "resize_window 300" >>tmp.tcl
echo "redraw" >>tmp.tcl
echo "save_tiff "$sub".rh.lat.lr.tif" >>tmp.tcl
echo "rotate_brain_y 180.0" >>tmp.tcl
echo "redraw" >>tmp.tcl
echo "save_tiff "$sub".rh.med.lr.tif" >>tmp.tcl
echo "exit 0" >>tmp.tcl
tksurfer $sub rh pial -tcl tmp.tcl
......
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