Commit f556ae67 authored by John David Osborne's avatar John David Osborne
Browse files

Update to run all of UMLS, bash file to make it easy, build jar with all dependencies

parent 14d0f1a0
#!/bin/bash
java -cp target/umlsIndex-0.0.2-SNAPSHOT-jar-with-dependencies.jar edu.uab.ccts.nlp.umlsIndex.UmlsIndexWriter jdbc:oracle:thin:umls/umls@genome-bmidb.ad.uab.edu:1521:ccts2
......@@ -62,6 +62,28 @@
</dependencies>
<build>
<plugins>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<archive>
<manifest>
<mainClass>edu.uab.ccts.nlp.umlsIndex.UmlsIndexWriter</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
<executions>
<execution>
<id>make-assembly</id> <!-- this is used for inheritance merges -->
<phase>package</phase> <!-- bind to the packaging phase -->
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
......
......@@ -19,7 +19,7 @@ WHERE mrconso.LAT='ENG'
-- AND mrconso.ts = 'P'
-- AND mrconso.stt = 'PF'
-- AND mrconso.ispref = 'Y'
AND tui IN ('T046')
-- AND tui IN ('T046')
-- AND tui IN ('T046','T047')
-- AND mrconso.cui='C0814136'
GROUP BY mrconso.cui
......
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