Commit c10a0c60 authored by Ravi Tripathi's avatar Ravi Tripathi
Browse files

Updating notebook for verison 3.5.2-GCC-5.4.0-2.26

parent ad01d9cf
......@@ -28,7 +28,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:34:53.468145Z",
"start_time": "2020-08-11T22:34:53.306898Z"
}
},
"outputs": [],
"source": [
"!singularity --version"
......@@ -37,10 +42,15 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:34:58.431068Z",
"start_time": "2020-08-11T22:34:53.469363Z"
}
},
"outputs": [],
"source": [
"!singularity pull shub://neurodebian/neurodebian"
"!singularity pull neurodebian-neurodebian-master-latest.simg shub://neurodebian/neurodebian"
]
},
{
......@@ -53,7 +63,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:34:58.582778Z",
"start_time": "2020-08-11T22:34:58.432744Z"
}
},
"outputs": [],
"source": [
"!ls"
......@@ -70,7 +85,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:34:58.894698Z",
"start_time": "2020-08-11T22:34:58.584121Z"
}
},
"outputs": [],
"source": [
"!singularity exec neurodebian-neurodebian-master-latest.simg ls /home/$USER"
......@@ -86,7 +106,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:34:59.232476Z",
"start_time": "2020-08-11T22:34:58.895889Z"
}
},
"outputs": [],
"source": [
"!singularity exec neurodebian-neurodebian-master-latest.simg dcm2nii"
......@@ -111,7 +136,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:34:59.519104Z",
"start_time": "2020-08-11T22:34:59.233700Z"
}
},
"outputs": [],
"source": [
"!singularity exec neurodebian-neurodebian-master-latest.simg ls /"
......@@ -152,6 +182,10 @@
"cell_type": "code",
"execution_count": null,
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:34:59.886832Z",
"start_time": "2020-08-11T22:34:59.520306Z"
},
"scrolled": true
},
"outputs": [],
......@@ -171,7 +205,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:35:00.046744Z",
"start_time": "2020-08-11T22:34:59.888709Z"
}
},
"outputs": [],
"source": [
"!singularity --help"
......@@ -187,10 +226,15 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:35:00.206371Z",
"start_time": "2020-08-11T22:35:00.048067Z"
}
},
"outputs": [],
"source": [
"!singularity pull help"
"!singularity pull --help"
]
},
{
......@@ -210,7 +254,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:35:00.488840Z",
"start_time": "2020-08-11T22:35:00.207673Z"
}
},
"outputs": [],
"source": [
"!singularity exec neurodebian-neurodebian-master-latest.simg ls /data/user/$USER"
......@@ -230,7 +279,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:35:00.770010Z",
"start_time": "2020-08-11T22:35:00.490077Z"
}
},
"outputs": [],
"source": [
"!singularity exec -B /data/user/$USER neurodebian-neurodebian-master-latest.simg ls /data/user/$USER"
......@@ -246,7 +300,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:35:01.063680Z",
"start_time": "2020-08-11T22:35:00.771488Z"
}
},
"outputs": [],
"source": [
"!singularity exec -B /data/user/wsmonroe neurodebian-neurodebian-master-latest.simg ls /data/user/wsmonroe"
......@@ -321,7 +380,12 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:35:01.773415Z",
"start_time": "2020-08-11T22:35:01.064905Z"
}
},
"outputs": [],
"source": [
"!singularity pull docker://jess/gcloud"
......@@ -330,10 +394,15 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:35:03.195267Z",
"start_time": "2020-08-11T22:35:01.774732Z"
}
},
"outputs": [],
"source": [
"!singularity exec -B /data/user/$USER gcloud.simg gsutil"
"!singularity exec -B /data/user/$USER gcloud_latest.sif gsutil"
]
},
{
......@@ -360,10 +429,15 @@
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"metadata": {
"ExecuteTime": {
"end_time": "2020-08-11T22:35:03.344604Z",
"start_time": "2020-08-11T22:35:03.196777Z"
}
},
"outputs": [],
"source": [
"!rm *.simg"
"!rm *.sif *.simg"
]
},
{
......@@ -419,7 +493,20 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.2"
"version": "3.7.6"
},
"toc": {
"base_numbering": 1,
"nav_menu": {},
"number_sections": true,
"sideBar": true,
"skip_h1_title": false,
"title_cell": "Table of Contents",
"title_sidebar": "Contents",
"toc_cell": false,
"toc_position": {},
"toc_section_display": true,
"toc_window_display": false
}
},
"nbformat": 4,
......
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