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RC Training Sessions
singularity_containers
Commits
f75c055f
Commit
f75c055f
authored
Apr 30, 2019
by
Ravi Tripathi
Browse files
Modify README file for the project to add steps to start a Jupyter notebook
parent
8ea6237f
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@@ -15,11 +15,22 @@ Copy and paste the following code into the editor window. (Replace all current c
#!/bin/bash
# JOB HEADERS HERE
git clone https://gitlab.rc.uab.edu/rc-training-sessions/singularity_containers.git /data/user/
$USER
/
r-visualization
s
git clone https://gitlab.rc.uab.edu/rc-training-sessions/singularity_containers.git /data/user/
$USER
/
singularity_container
s
```
# Start Jupyter Notebook
Launch Jupyter Notebook through the interactive apps page in the OnDemand (rc.uab.edu) portal
Launch Jupyter Notebook through the interactive apps page in the OnDemand (rc.uab.edu) portal
using following settings:
## Environment Setup:
```
# Load required modules
module load Singularity/2.5.2-GCC-5.4.0-2.26
module load Anaconda3
```
## Extra Jupyter Arguments:
```
--notebook-dir=/data/user/$USER/singularity_containers
```
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