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ENCODE HiC Installation and Setup

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    Authored by Matthew K Defenderfer

    Referencing ticket RITM0714040 for Manuel Rosa-Garrido. Manuel needs to run an altered version of the HiC pipeline on Cheaha. Prior debugging on the standard HiC pipeline was not fruitful so a workstation was used instead. The workstation isn't sufficient for the current analysis so we needed to get this version of the pipeline up and running on Cheaha. This snippet describes setup steps specifically for running ENCODE's HiC pipeline on Cheaha.

    Edited
    env.yml 3.65 KiB
    install.md 2.31 KiB
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