new file:   pbmc_case1.r
	new file:   pbmc_small_case2.r

Binder seurat java fix

See merge request mcbios19_single_cell/single_cell_rnaseq_hands-on_1!6

See https://gitlab.rc.uab.edu/jelaiw/infrastructure-development/issues/115#note_12612.

Also, see https://mybinder.readthedocs.io/en/latest/config_files.html#postbuild-run-code-after-installing-the-environment.

This is kind of kludgy, but will revisit after tomorrow's meeting.

	modified:   pbmc_case1.ipynb
	new file:   pbmc_small_case2.ipynb

Binder test peg runtime.txt at MRAN 3.4.4

See merge request mcbios19_single_cell/single_cell_rnaseq_hands-on_1!5

Update README.

The environment.yml file didn't work with Binder on first try.

See https://gitlab.rc.uab.edu/jelaiw/infrastructure-development/issues/115#note_12552.

See https://mybinder.readthedocs.io/en/latest/config_files.html#config-files.

	deleted:    pbmc_final.rds

Clear output and re-run all with conda env kernel.

See merge request mcbios19_single_cell/single_cell_rnaseq_hands-on_1!4

Update with brief dev setup instructions.

See merge request mcbios19_single_cell/single_cell_rnaseq_hands-on_1!3

Fix openssl bug on cell 12.

See merge request mcbios19_single_cell/single_cell_rnaseq_hands-on_1!2

See https://gitlab.rc.uab.edu/jelaiw/infrastructure-development/issues/110#note_12445.

R351 yaml test

See merge request mcbios19_single_cell/single_cell_rnaseq_hands-on_1!1

	new file:   pbmc_final.rds

Seurat at 2.3.4 in this conda env.

	renamed:    data/2.7kPBMC_filtered_gene_bc_matrices/hg19/barcodes.tsv -> dataset/2.7kPBMC_filtered_gene_bc_matrices/hg19/barcodes.tsv
	renamed:    data/2.7kPBMC_filtered_gene_bc_matrices/hg19/genes.tsv -> dataset/2.7kPBMC_filtered_gene_bc_matrices/hg19/genes.tsv
	renamed:    data/2.7kPBMC_filtered_gene_bc_matrices/hg19/matrix.mtx -> dataset/2.7kPBMC_filtered_gene_bc_matrices/hg19/matrix.mtx

	new file:   2.7kPBMC_filtered_gene_bc_matrices/hg19/genes.tsv
	new file:   2.7kPBMC_filtered_gene_bc_matrices/hg19/matrix.mtx
	new file:   ../pbmc_case1.ipynb