refactors variables to include "analysis" to path at higher level (4a2cdf9a) · Commits · center-for-computational-genomics-and-data-science / public / QuaC · GitLab

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4a2cdf9a

Commit 4a2cdf9a authored 3 years ago by Manavalan Gajapathy

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refactors variables to include "analysis" to path at higher level

parent a9860cff

1 merge request!2QC under one umbrella (well mostly) under QuaC

Changes 8

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src/run_quac.py 5 additions, 6 deletions

src/run_quac.py
workflow/Snakefile 11 additions, 11 deletions

workflow/Snakefile
workflow/rules/aggregate_results.smk 54 additions, 18 deletions

workflow/rules/aggregate_results.smk
workflow/rules/common.smk 1 addition, 1 deletion

workflow/rules/common.smk
workflow/rules/coverage_analysis.smk 21 additions, 21 deletions

workflow/rules/coverage_analysis.smk
workflow/rules/relatedness_ancestry.smk 9 additions, 9 deletions

workflow/rules/relatedness_ancestry.smk
workflow/rules/vcf_stats.smk 2 additions, 2 deletions

workflow/rules/vcf_stats.smk
workflow/rules/within_species_contamintation.smk 4 additions, 4 deletions

workflow/rules/within_species_contamintation.smk

with 107 additions and 72 deletions

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