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Commit 9edc03a1 authored by Manavalan Gajapathy's avatar Manavalan Gajapathy
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adds a todo to clean up for testing

parent 70cf53f5
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1 merge request!2QC under one umbrella (well mostly) under QuaC
......@@ -26,10 +26,11 @@ rule verifybamid:
params:
svd_prefix=lambda wildcards, input: input["svd"][0].replace(Path(input["svd"][0]).suffix, ""),
out_prefix=lambda wildcards, output: output["ancestry"].replace(".Ancestry", ""),
sanity_check="TODO: Setup --DisableSanityCheck flag for testing dataset",
threads: 4
shell:
r"""
verifybamid2 \
verifybamid2 {params.sanity_check} \
--NumThread {threads} \
--SVDPrefix {params.svd_prefix} \
--Reference {input.ref_genome} \
......
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