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Bo-Chun Chen
bc_uab_jupyterlab
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0729d3a2
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0729d3a2
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2 years ago
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Bo-Chun Chen
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# Batch Connect -
Example Jupyter Notebook Server
# Batch Connect -
JupyterLab


An example Batch Connect app that launches a Jupyter
Notebook server
within a
An example Batch Connect app that launches a Jupyter
Lab
within a
batch job.
## Prerequisites
...
...
@@ -12,9 +12,9 @@ This Batch Connect app requires the following software be installed on the
**compute nodes**
that the batch job is intended to run on (
**NOT**
the
OnDemand node):
-
[
Jupyter
Notebook
](
http://jupyter.readthedocs.io/en/latest/
)
4
.2.
3+
(earlier
-
[
Jupyter
Lab
](
http://jupyter
lab
.readthedocs.io/en/latest/
)
3
.2.
1
(earlier
versions are untested but may work for you)
-
[
OpenSSL
](
https://www.openssl.org/
)
1.0.1+ (used to hash the Jupyter
Notebook
-
[
OpenSSL
](
https://www.openssl.org/
)
1.0.1+ (used to hash the Jupyter
Lab
server password)
**Optional**
software:
...
...
@@ -22,7 +22,7 @@ OnDemand node):
-
[
Lmod
](
https://www.tacc.utexas.edu/research-development/tacc-projects/lmod
)
6.
0.1+ or any other
`module purge`
and
`module load <modules>`
based CLI
used to load appropriate environments within the batch job before launching
the Jupyter
Notebook server
.
the Jupyter
Lab
.
## Install
...
...
@@ -34,16 +34,16 @@ this.
```
sh
# Download the zip from the GitHub page
wget https://github.com/
OSC/bc_example
_jupyter/archive/master.tar.gz
wget https://github.com/
uabrc/ood
_jupyter
lab
/archive/master.tar.gz
# Create a catchy directory
mkdir
my_jupyter_app
mkdir
my_jupyter
lab
_app
# Unzip the downloaded file into this directory
tar
xzvf master.tar.gz
-C
my_jupyter_app
--strip-components
=
1
tar
xzvf master.tar.gz
-C
my_jupyter
lab
_app
--strip-components
=
1
# Change the working directory to this new directory
cd
my_jupyter_app
cd
my_jupyter
lab
_app
```
From here you will make any modifications to the code that you would like and
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