Moving things from src and updating documentation for release

docs/dev_requirements.txt

-mlflow==1.26.1
-scikit-learn==1.1.1
-optbinning==0.14.1
+mlflow==2.2.0
 pandas==1.4.3
 openpyxl==3.0.10
 numpy==1.23.0
 matplotlib==3.5.2
-scikit-learn-intelex==2021.6.3
-shap==0.41.0
-numpyencoder==0.3.0
-argparse==1.4.0
-mkdocs==1.3.1
-mkdocstrings==0.18.1
 rich==12.5.1
 black==22.6.0
 flake8==5.0.2
 typer==0.6.1
 tensorflow==2.9.2
+mkdocs
+mkdocstrings
+isort
 jupyter
-pillow
-opencv-python
 mne
 mpld3
-mne-icalabel
 scipy
 tensorflow-addons
 neurokit2
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docs/hrv_meg/compare.md

+::: hrv_meg.compare
\ No newline at end of file

docs/hrv_meg/main.md

+::: hrv_meg.main
\ No newline at end of file

docs/hrv_meg/meg_to_ica.md

+::: hrv_meg.meg_to_ica
\ No newline at end of file

docs/hrv_meg/plotter.md

+::: hrv_meg.plotter
\ No newline at end of file

docs/hrv_meg/predict.md

+::: hrv_meg.predict
\ No newline at end of file

docs/hrv_meg/preprocess_ecg.md

+::: hrv_meg.preprocess_ecg
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docs/index.md

+## Documentation
+
+- [Workflows](hrv_meg/main.md): Access point for the various workflows
+- [hrv_meg](hrv_meg/compare.md): This code that directly compares the ECG data to the MEG data including time alignment and plotting comparable plots.
+- [hrv_meg](hrv_meg/meg_to_ica.md): This code converts the MEG signal into independent components
+- [hrv_meg](hrv_meg/plotter.md): Code associated with some (but not all) of the plot generation
+- [hrv_meg](hrv_meg/predict.md): Code associated with automated identification of the strongest cardiac signal with MEGNet
+- [utils](utils/config_utils.md): Generic helper functions to interface with json, pick random seeds, etc.
+- [utils](utils/get_data.md): Generic helper functions for searching through folders to get data to process
+- [utils](utils/print_info.md): Helper functions to support experiment tracking and interfacing with MLFlow
+
+

docs/serve_docs.sh

 #!/bin/bash
 
-cd /workspaces/HRV_MEG/src
+cd /workspaces/HRV_MEG/
 python3 -m mkdocs serve
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docs/src_setup.sh

 #!/bin/bash
 
-cd /workspaces/HRV_MEG/src
+cd /workspaces/HRV_MEG
 pip install --upgrade pip setuptools wheel\
     && pip install -e ".[dev]"
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docs/utils/config_utils.md

+::: utils.config_utils
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docs/utils/get_data.md

+::: utils.get_data
\ No newline at end of file